50th Annual Meeting of the APS Division of Atomic, Molecular and Optical Physics APS Meeting
Volume 64, Number 4
Monday–Friday, May 27–31, 2019;
Milwaukee, Wisconsin
Session H09: Collisions with Biomolecules
8:00 AM–10:00 AM,
Wednesday, May 29, 2019
Wisconsin Center
Room: 103DE
Co-Sponsoring
Unit:
GEC
Chair: James Colgan, LANL
Abstract: H09.00003 : Dissociative Electron Attachment to Biomolecules.*
9:00 AM–9:30 AM
Preview Abstract
Abstract
Author:
Sylwia Ptasinska
(University of Notre Dame)
Dissociative electron attachment (DEA) to biomolecules plays an essential
role in radiation damage initiated by high-energy radiation. A variety of
biomolecular systems, including DNA, RNA, and proteins constituents have
been the focus of a lot of the DEA experimental work over last two decades
[1]. These studies showed rich fragmentation patterns formed via resonant
electron capture into one of the metastable valence states of a molecule.
However, resonance characterization still remains challenging in spite of a
number of theoretical and experimental attempts. Therefore, our recent work
focuses on targets, such as amides, that can be considered models for larger
biologically relevant molecules, that are peptides. The choice of these
simpler systems, containing amide bonds, was dictated by a possibility of
performing high-level electronic structure calculations and a possibility of
studying them in the gas phase.
In this talk, we present our results of experimental and computational
studies of the gas-phase DEA to three prototypical peptide molecules,
formamide, N-methylformamide (NMF), and N,N-dimethylformamide (DMF). In
addition to careful investigations of all fragments formed via DEA [2], our
great focus has been on amide bond rupture. Interestingly, a double-resonant
structure was observed at similar energies in the ion yields for all ions
resulting from this C-N bond cleavage, such as NH2- for formamide, NHCH3-
for NMF, and N(CH3)2- for DMF. Several of possible mechanisms of electron
attachment were considered computationally in order to characterize these
peaks. Based on our calculations, these resonances can be assigned to
core-excited dipole-supported resonances populated upon DEA [3]. Our results
suggest that the formation of ``spin-forbidden'' dipole-supported resonances
can be of a general implication of DEA to larger biological complexes,
containing the amide bond.
[1] J.D. Gorfinkiel, S. Ptasinska - Electron scattering from molecules and
molecular aggregates of biological relevance. Journal of Physics B: Atomic,
Molecular, Optical Physics (2017) 182001
[2] M.M. Dawley, S. Ptasinska - Dissociative electron attachment to
gas-phase N-methylformamide, International Journal of Mass Spectrometry
365-366 (2014) 143-151
[3] Z. Li, M. Ryszka, M.M. Dawley, I. Carmichael, K. Bravaya, S. Ptasinska -
Dipole-supported electronic resonances mediate electron-induced amide bond
cleavage. Physical Review Letters (2019) in press
*This material is based upon work supported by the U.S. Department of Energy Office of Science, Office of Basic Energy Sciences under Award Number DE-FC02-04ER15533.