Session Index

Session T39: Computational Molecular Biophysics

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Abstracts
Sponsoring Units: DBP
Chair: Peter Hugo Nelson, Benedictine University
Room: A124/127


Wednesday, March 23, 2011
2:30PM - 2:42PM

T39.00001: Simulation of pH-dependent Behavior of Liposome
Rejwan Ali

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Wednesday, March 23, 2011
2:42PM - 2:54PM

T39.00002: \textit{In silico} investigation of molecular effects caused by missense mutations in creatine transporter protein
Zhe Zhang , Charles Schwatz , Emil Alexov

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Wednesday, March 23, 2011
2:54PM - 3:06PM

T39.00003: Investigating the mechanism of DNA bulk hybridization with Forward Flux Sampling
Daniel Hinckley

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Wednesday, March 23, 2011
3:06PM - 3:18PM

T39.00004: A backbone based protein model with explicit solvent
Sumit Sharma , Sergey Buldyrev , Peter J. Rossky , H. Eugene Stanley , Pablo G. Debenedetti , C. Austen Angell , Sanat K. Kumar

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Wednesday, March 23, 2011
3:18PM - 3:30PM

T39.00005: Connecting ion channel simulations to experiment
Peter Hugo Nelson

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Wednesday, March 23, 2011
3:30PM - 3:42PM

T39.00006: On the Minimum Energy Path to Membrane Pore Formation
Christina Ting , Zhen-Gang Wang

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Wednesday, March 23, 2011
3:42PM - 3:54PM

T39.00007: Capturing electrostatic interactions explicitly with the 3SPN model for DNA
Gordon S. Freeman , Daniel M. Hinckley , Juan J. de Pablo

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Wednesday, March 23, 2011
3:54PM - 4:06PM

T39.00008: Intrinsic noise in stochastic models of gene expression with molecular memory and bursting
Tao Jia , Rahul V. Kulkarni

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Wednesday, March 23, 2011
4:06PM - 4:18PM

T39.00009: First-Principles Study of Muon Trapping in Singlet and Triplet States of Oxyhemoglobin
S.R. Badu , Achana Dubey , Lee Chow , R.H. Pink , R.H. Scheicher , K. Nagamine , N. Sahoo , T.P. Das

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Wednesday, March 23, 2011
4:18PM - 4:30PM

T39.00010: Binding-rebinding dynamics of proteins interacting non-specifically with a long DNA molecule
Azita Parsaeian , John F. Marko , Monica Olvera de la Cruz

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Wednesday, March 23, 2011
4:30PM - 4:42PM

T39.00011: Regulation of gene expression by small RNAs via coupled stoichiometric degradation: a variational approach
Thierry Platini , Tao Jia , Rahul V. Kulkarni

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Wednesday, March 23, 2011
4:42PM - 4:54PM

T39.00012: Spatial gradients of Ran-GTP-importin-$\beta$ complex around chromosomes in a cell of spheroidal shape
Guillermo Ramirez-Santiago , Gerardo Sosa

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Wednesday, March 23, 2011
4:54PM - 5:06PM

T39.00013: Kinetic simulations of tension-induced DNA strand-unpeeling transition
Yuanyuan Qu , Hongxia Fu , Jie Yan

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Wednesday, March 23, 2011
5:06PM - 5:18PM

T39.00014: Determination of NMR chemical shifts for cholesterol crystals from first-principles
Emine Kucukbenli , Stefano de Gironcoli

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