Session A26: Biomolecular Computation

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Abstracts
Sponsoring Units: DBP
Chair: Thomas Darden, National Institute of Health
Baltimore Convention Center - 323


Monday, March 13, 2006
8:00AM - 8:12AM

A26.00001: Quantum Mechanical Study of C-Terminal Cleavage Reaction in Inteins
Philip Shemella , Saroj Nayak , Brian Pereira , Shekhar Garde , Georges Belfort , Patrick Van Roey , Vicky Derbyshire , Marlene Belfort

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Monday, March 13, 2006
8:12AM - 8:24AM

A26.00002: Evolutionary Strategies for Protein Folding
Srinivasa Murthy Gopal , Wolfgang Wenzel

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Monday, March 13, 2006
8:24AM - 8:36AM

A26.00003: Towards predictive molecular dynamics simulations of DNA: electrostatics and solution/crystal environments
Volodymr Babin , Jason Baucom , Thomas Darden , Celeste Sagui

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Monday, March 13, 2006
8:36AM - 8:48AM

A26.00004: Coarse-grained model of chaperonin-mediated protein folding
George Stan , D. Thirumalai , George Lorimer , Bernard Brooks

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Monday, March 13, 2006
8:48AM - 9:00AM

A26.00005: Using Molecular Dynamics simulations in the analysis of Electron Spin Resonance spectra
Deniz Sezer , Benoit Roux

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Monday, March 13, 2006
9:00AM - 9:12AM

A26.00006: Locating structural energy minimum of biological molecules in explicit solvent
Eric Dykeman , Otto Sankey

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Monday, March 13, 2006
9:12AM - 9:24AM

A26.00007: Predicting 3D structures of transient protein-protein complexes
Petras Kundrotas , Emil Alexov

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Monday, March 13, 2006
9:24AM - 9:36AM

A26.00008: Charge transfers from Na atom in (H2O)n clusters and in water solution
Takeshi Nozue , Junichi Hoshino , Kazuo Tsumuraya

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Monday, March 13, 2006
9:36AM - 9:48AM

A26.00009: Coarse-graining protein energetics in sequence variables
Fei Zhou , Gevorg Grigoryan , Amy Keating , Gerbrand Ceder , Dane Morgan

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Monday, March 13, 2006
9:48AM - 10:00AM

A26.00010: MAME Water Model: hydrogen bonding, electrostatic, polarization and van der Waals interactions in water.
Eugene Tsiper

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Monday, March 13, 2006
10:00AM - 10:12AM

A26.00011: Accurate computation and interpretation of spin-dependent properties in metalloproteins
Jorge Rodriguez

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Monday, March 13, 2006
10:12AM - 10:24AM

A26.00012: Computational studies of a redox-driven proton pump: Cytochrome c oxidase and biological energy transduction
Alexei A. Stuchebrukhov

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Monday, March 13, 2006
10:24AM - 10:36AM

A26.00013: Ab Initio QM/MM Study of the Ester-hydrolysis Reaction Mechanism in Haloalkane Dehalogenase
Yiming Zhang , Yu Zhou , Saroj Nayak , Angel Garcia

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Monday, March 13, 2006
10:36AM - 10:48AM

A26.00014: Combining biophysical and bioinformatical approaches for predicting residue's contacts.
Emil Alexov , Amber Allardice , Petras Kundrotas

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